Ecosystems and Oceanography Publications

Abecassis M, Dewar H, Hawn D, Polovina J
2012.  Modeling swordfish daytime vertical habitat in the North Pacific Ocean from pop-up archival tags.  Marine Ecology Progress Series 452: 219-236. doi:10.3354/meps09583.
Abecassis M, Lehodey P, Senina I, Polovina J, Calmettes B, Williams P
2011.  Application of the SEAPODYM model to swordfish in the Pacific Ocean.  Paper presented at the 7th Regular Session of the Scientific Committee, Western and Central Pacific Fisheries Commission, 9-17 August 2011, Pohnpei, Federated States of Micronesia, WCPFC-SC7-2011/EB-IP-07. Pacific Islands Fisheries Science Center, PIFSC Working Paper, WP-11-011, 23 p.  [download]
Abecassis M, Polovina J, Baird RW, Copeland A, Drazen JC, Domokos R, Oleson E, Jia Y, Schorr GS, Webster DL, Andrews RD
2015.  Characterizing a foraging hotspot for short-finned pilot whales and Blainville's beaked whales located off the west side of Hawaii Island using tagging and oceanographic data.  PLoS ONE 10(11): e0142628. doi:10.1371/journal.pone.0142628.  [download]
Abecassis M, Senina I, Lehodey P, Gaspar P, Parker D, Balazs G, Polovina J
2013.  A model of loggerhead sea turtle (Caretta caretta) habitat and movement in the oceanic North Pacific.  PLoS ONE 8(9): e73274. doi:10.1371/journal.pone.0073274.  [download]
Alpert AE, Cohen AL, Oppo DW, DeCarlo TM, Gove JM, Young CW
2016.  Comparison of equatorial Pacific sea surface temperature variability and trends with Sr/Ca records from multiple corals.  Paleoceanography 31:252-265. doi:10.1002/2015PA002897.  [download]
Antonelis GA, Baker JD, Polovina JJ
2003.  Improved body condition of weaned Hawaiian monk seal pups associated with El Nino events: potential benefits to an endangered species.  Marine Mammal Science 19(3): 590-598. doi:10.1111/j.1748-7692.2003.tb01323.x.
Baker JD, Howell EA, Polovina JJ
2012.  Relative influence of climate variability and direct anthropogenic impact on a sub-tropical Pacific top predator, the Hawaiian monk seal.  Marine Ecology Progress Series 469: 175-189. doi:10.3354/meps09987.  [download]
Baker JD, Polovina JJ, Howell EA
2007.  Effect of variable oceanic productivity on the survival of an upper trophic predator, the Hawaiian monk seal Monachus schauinslandi.  Marine Ecology Progress Series 346: 277-283. doi:10.3354/meps06968.
Berkson J, Barbieri L, Cadrin S, Cass-Calay S, Crone P, Dorn M, FRiess C, Kobayashi D, Miller TJ, Patrick WS, Pautzke S, Ralston S, Trianni M
2011.  Calculating acceptable biological catch for stocks that have reliable catch data only (Only Reliable Catch Stocks - ORCS)  U.S. Dept. of Commerce, NOAA Technical Memorandum NOAA-TM-NMFS-SEFSC-616, 44 p.  [download]
Bidigare RR, Benitez-Nelson C, Leonard CL, Quay PD, Parsons ML, Foley DG, Seki MP
2003.  Influence of a cyclonic eddy on microheterotroph biomass and carbon export in the lee of Hawaii.  Geophysical Research Letters 30(6): 1318.
Blyth-Skyrme VJ, Rooney JJ, Parrish FA, Boland RC
2013.  Mesophotic coral ecosystems - potential candidates as essential fish habitat and habitat areas of particular concern.  Pacific Islands Fisheries Science Center Administrative Report H-13-02, 53 p.  [download]
Bograd SJ, Hazen EL, Howell EA, Hollowed AB
2014.  The fate of fisheries oceanography: Introduction to the special issue.  Oceanography 27(4): 21-25. doi:10.5670/oceanog.2014.83.  [download]
Boland R
1997.  A preliminary survey of the underwater accumulation of derelicts nets at French Frigate Shoals.  Southwest Fisheries Science Center Administrative Report H-97-13, 9 p.  [download]
Boland R, Zgliczynski B, Asher J, Hall A, Hogrefe K, Timmers M
2006.  Dynamics of debris densities and removal at Northwestern Hawaiian Islands coral reefs.  Atoll Research Bulletin 543: 461-470.  [download]
Boland RC
1999.  Surveys of submerged marine debris and impacts on endangered monk seals at two Hawaiian atolls.  To be presented at the World Marine Mammal Conference 13th Biennial Conference, Maui, Hawaii, 28 November - 3 December 1999.
Boland RC, Donohue MJ
2003.  Marine debris accumulation in the nearshore marine habitat of the endangered Hawaiian monk seal, Monachus schauinslandi, 1999-2001.  Marine Pollution Bulletin 46(11): 1385-1394.
Boland RC, Parrish FA
2005.  A description of fish assemblages in the black coral beds off Lahaina, Maui, Hawai'i.  Pacific Science 59(3): 411-420.
Bower JR, Seki MP, Young RE, Bigelow KA, Hirota J, Flament P
1999.  Cephalopod paralarvae assemblages in Hawaiian Island waters.  Marine Ecology Progress Series 185: 203-212.
Bustamante R, Reck G, Ruttenberg B, Polovina J
2008.  The Galapagos spiny lobster fishery.  In: Phillips B and Kittaka J (eds.). Spiny Lobsters: Fisheries and Culture, 2nd ed. Blackwell Science Ltd, Oxford, UK. doi:10.1002/9780470698808.ch12.
Costa BM, Kendall MS, Rooney J, Chow M, Lecky J, Parrish FA, Montgomery A, Boland RC, Spalding H
2012.  Prediction of mesophotic coral distributions in the Au'au Channel, Hawaii.  U.S. Dept. of Commerce, NOAA Technical Memorandum NOS NCCOS 149, 44 p. Prepared by the NCCOS Center for Coastal Monitoring and Assessment Biogeography Branch. Silver Spring, MD.  [download]
DeMartini EE, Mundy BC, Polovina JJ
1999.  Status of nearshore sports and commercial fishing and impacts on biodiversity in the tropical insular Pacific.  In: LG Eldredge, JE Maragos, PF Holthus, HF Takeuchi (eds.). Marine and Coastal Biodiversity in the Tropical Island Pacific Region, pp. 339-355.
DeMartini EE, Parrish FA
1996.  A reevaluation of shallow reef fish populations at French Frigate Shoals and Midway Atoll in September 1995.  Southwest Fisheries Science Center Administrative Report H-96-01, 20 p.  [download]
DeMartini EE, Parrish FA
1997.  August-September 1996 reevaluation of shallow reef fish populations at French Frigate Shoals and Midway Atoll.  Southwest Fisheries Science Center Administrative Report H-97-05, 22 p.  [download]
DeMartini EE, Parrish FA
1998.  August 1997 reevaluation of shallow reef fish populations at French Frigate Shoals and Midway Atoll.  Southwest Fisheries Science Center Administrative Report H-98-12, 27 p.  [download]
DeMartini EE, Parrish FA, Boland RC
2002.  Comprehensive evaluation of shallow reef fish populations at French Frigate Shoals and Midway Atoll, Northwestern Hawaiian Islands (1992/93, 1995-2000)  U.S. Dept. of Commerce, NOAA Technical Memorandum NOAA-TM-NMFS-SWFSC-347, 54 p. + Appendices.  [download]
DeMartini EE, Parrish FA, Ellis DM
1996.  Barotrauma-associated regurgitation of food: implications for diet studies of Hawaiian pink snapper, Pristipomoides filamentosus (family Lutjanidae)  Fishery Bulletin 94: 250-256.
DeMartini EE, Parrish FA, Parrish JD
1993.  Temporal changes in reef fish prey populations at French Frigate Shoals, Northwestern Hawaiian Islands: Implications for juvenile monk seal (Monachus schauinslandi) predators.  Southwest Fisheries Science Center Administrative Report H-93-06, 49 p.  [download]
DeMartini EE, Parrish FA, Parrish JD
1994.  Temporal comparisons of reef fish populations at Midway Atoll, Northwestern Hawaiian Islands.  Southwest Fisheries Science Center Administrative Report H-94-05, 56 p.  [download]
DeMartini EE, Parrish FA, Parrish JD
1995.  Interdecadal changes in reef fish abundance at two pristine Hawaiian atolls.  The 8th International Coral Reef Symposium, June 1996, Panama.
DeMartini EE, Parrish FA, Parrish JD
1996.  Interdecadal change in reef fish populations at French Frigate Shoals and Midway Atoll, Northwestern Hawaiian Islands: Statistical power in retrospect.  Bulletin of Marine Science 58: 826-837.
DeMartini EE, Wren JLK, Kobayashi DR
2013.  Persistent spatial patterns of recruitment in a guild of Hawaiian coral reef fishes.  Marine Ecology Progress Series 485: 165-179. doi:10.3354/meps10306.
Demer DA, Berger L, Bernasconi M, Bethke E, Boswell K, Chu D, Domokos R, et al.
2015.  Calibration of acoustic instruments.  ICES Cooperative Research Report No. 326, 133 p.
Domokos R
2009.  Environmental effects on forage and longline fishery performance for albacore (Thunnus alalunga) in the American Samoa Exclusive Economic Zone.  Fisheries Oceanography 18(6): 419-438.  [download]
Domokos R, Seki MP, Polovina JJ, Hawn DR
2007.  Oceanographic investigation of the American Samoa albacore (Thunnus alalunga) habitat and longline fishing grounds.  Fisheries Oceanography 16(6): 555-572.
Doney SC, Ruckelshaus M, Duffy JE, Barry JP, Chan F, English CA, Galindo HM, Grebmeier JM, Hollowed AB, Knowlton N, Polovina J, Rabalais NN, Sydeman WJ, Talley LD
2012.  Climate change impacts on marine ecosystems.  Annual Review of Marine Science 4:11-37.
Donohue MJ, Boland RC, Sramek CM, Antonelis GA
2001.  Derelict fishing gear in the coral reef ecosystem of the Northwestern Hawaiian Islands: Diving surveys and debris removal in 1999 confirm threat to coral reef ecosystems.  Marine Pollution Bulletin 42(12): 1301-1312.
Forney KA, Kobayashi DR
2007.  Updated estimates of mortality and injury of cetaceans in the Hawaii-based longline fishery, 1994-2005.  U.S. Dept. of Commerce, NOAA Technical Memorandum NOAA-TM-NMFS-SEFSC-412, 30 p.  [download]
Forney KA, Kobayashi DR, Johnston DW, Marchetti JA, Marsik MG
2011.  What's the catch? Patterns of cetacean bycatch and depredation in Hawaii-based pelagic longline fisheries.  Marine Ecology 32(3): 380-391. doi:10.1111/j.1439-0485.2011.00454.x.
Friedlander A, Kobayashi D, Bowen B, Meyers D, Papastamatiou Y, DeMartini E, Parrish F, Treml E, Currin C, Hilting A, Weiss J, Kelley C, O'Conner R, Parke M, Clark R, Toonen R, Wedding L
2009.  Connectivity and integrated ecosystem studies.  In: Friedlander A, Keller K, Wedding L, Clarke A, Monaco M (eds.). A marine biogeographic assessment of the Northwestern Hawaiian Islands, Chapter 9, pp. 291-330. NOAA Technical Memorandum NOS NCCOS 84. Prepared by NCCOS's Biogeography Branch in cooperation with the Office of National Marine Sanctuaries Papahanaumokuakea Marine National Monument, Silver Spring, MD, 363 p.  [download]
Gilman E, Brothers N, Kobayashi DR
2005.  Principles and approaches to abate seabird by-catch in longline fisheries.  Fish and Fisheries 6(1): 35-49.
Gilman E, Brothers N, Kobayashi DR
2007.  Comparison of three seabird bycatch avoidance methods in Hawaii-based pelagic longline fisheries.  Fisheries Science 73: 208-210.
Gilman E, Kobayashi D, Chaloupka M
2008.  Reducing seabird bycatch in the Hawaii longline tuna fishery.  Endangered Species Research 5: 309-323.  [download]
Gilman E, Kobayashi D, Swenarton T, Brothers N, Dalzell P, Kinan-Kelly I
2007.  Reducing sea turtle interactions in the Hawaii-based longline swordfish fishery.  Biological Conservation 139(1-2): 19-28.
Gove JM, McManus MA, Neuheimer AB, Polovina JJ, Drazen JC, Smith CR, Merrifield MA, Friedlander AM, Ehses JS, Young CW, Dillon AK, Williams GJ
2016.  Near-island biological hotspots in barren ocean basins.  Nature Communications 7: 10581. doi:10.1038/ncomms10581.  [download]
Gove JM, Polovina JJ, Walsh WJ, Heenan A, Williams ID, Wedding LM, Ingram RJ, Lecky J, Oleson KLL, Walecka H, Heron SF, Couch CS, Howell EA
2016.  West Hawai'i integrated ecosystem assessment : ecosystem trends and status report.  Pacific Islands Fisheries Science Center, PIFSC Special Publication, SP-16-004, 46 p. doi:10.7289/V5/SP-PIFSC-16-004.  [download]
Grigg RW, Polovina J, Friedlander AM, Rohmann SO
2008.  Biology of coral reefs in the Northwestern Hawaiian Islands.  In: Riegl BM and Dodge RE (eds.). Coral reefs of the USA. Coral reefs of the world 1. New York: Springer. Ch. 14: pp. 573-594.
Grigg RW, Polovina JJ, Atkinson MJ
1984.  Model of a coral reef ecosystem. III. Resource limitation, community regulation, fisheries yield and resource management.  Coral Reefs 3: 23-27.
Haight WR, Kobayashi DR, Kawamoto KE
1993.  Biology and management of deepwater snappers of the Hawaiian Archipelago.  In: Boehlert GW (ed.). The fisheries of Hawaii and U.S.-associated Pacific Islands. Mar. Fish. Rev. 55(2): 20-27.
Haight WR, Polovina JJ
1992.  Status of lobster stocks in the Northwestern Hawaiian Islands, 1991.  Southwest Fisheries Science Center Administrative Report H-92-02, 19 p.  [download]
Haight WR, Polovina JJ
1993.  Status of lobster stocks in the Northwestern Hawaiian Islands, 1992.  Southwest Fisheries Science Center Administrative Report H-93-04, 23 p.  [download]
Haight WR, Polovina JJ
1993.  Status of lobster stocks in the Northwestern Hawaiian Islands, 1993.  Southwest Fisheries Science Center Administrative Report H-93-17, 13 p. .  [download]
Harman RF, Seki MP
1990.  Iridoteuthis iris (Celphalopoda: Sepiolidae): New records from the central North Pacific and first description of the adults.  Pacific Science 44: 171-179.
Harrison CS, Hida TS
1980.  The status of seabird research in the Northwestern Hawaiian Islands.  In: Grigg RW and Pfund RT (eds.). Proceedings of the Symposium on Status of Resource Investigations in the Northwestern Hawaiian Islands, April 24-25, 1980, University of Hawaii, Honolulu, Hawaii. Sea Grant Misc. Rep. UNIHI-SEAGRANT-MR-80-04, p. 17-31.
Harrison CS, Hida TS, Seki MP
1984.  The diet of the brown booby (Sula dactylatra) and the masked booby (Sula leucogaster) on Rose Atoll, Samoa.  Ibis 126: 588-590.
Harrison CS, Seki MP
1987.  Trophic relationships among tropical seabirds at the Hawaiian Islands.  In: Croxall JP (ed.). Seabirds: feeding ecology and role in marine ecosystems, Chapter 13, p. 305-326. Cambridge University Press, England.
Hollier D
2008.  Mapping the void.  Hana Hou! 11(4): 34-39.
Howell E, Hoover A, Benson SR, Bailey H, Polovina JJ, Seminoff JA, Dutton PH
2015.  Enhancing the TurtleWatch product for leatherback sea turles, a dynamic habitat model for ecosystem-based management.  Fisheries Oceanography 24(1): 57-68. doi:10.1111/fog.12092.
Howell EA
2009.  Satellite-based horizontal and vertical habitat estimation for loggerhead turtles (Caretta caretta) and bigeye tuna (Thunnus obesus) in the North Pacific Ocean.  Thesis (Ph.D.). Hokkaido University, Japan, 156 p.  [download]
Howell EA, Bograd SJ, Hoover AL, Seki MP, Polovina JJ
2015.  Variation in phytoplankton composition between two North Pacific front zones along 158 degrees west during winter-spring 2008-2011.  Progress in Oceanography 2015. doi:10.1016/j.pocean.2015.06.003.
Howell EA, Bograd SJ, Morishige C, Seki MP, Polovina JJ
2012.  On North Pacific circulation and associated marine debris concentration.  Marine Pollution Bulletin 65: 16-22. doi:10.1016/j.marpolbul.2011.04.034 .
Howell EA, Dutton PH, Polovina JJ, Bailey H, Parker DM, Balazs GH
2010.  Oceanographic influences on the dive behavior of juvenile loggerhead turtles (Caretta caretta) in the North Pacific Ocean.  Marine Biology 157(5): 1011-1026. doi:10.1007/s00227-009-1381-0.
Howell EA, Hawn DR, Polovina JJ
2010.  Spatiotemporal variability in bigeye tuna (Thunnus obesus) dive behavior in the central North Pacific Ocean.  Progress in Oceanography 86: 81-93. doi:10.1016/j.pocean.2010.04.013.
Howell EA, Kobayashi DR
2006.  El Nino effects in the Palmyra Atoll region: oceanographic changes and bigeye tuna (Thunnus obesus) catch rate variability.  Fisheries Oceanography 15(6): 477-489.
Howell EA, Kobayashi DR, Parker DM, Balazs GH, Polovina JJ
2008.  TurtleWatch: a tool to aid in the bycatch reduction of loggerhead turtles Caretta caretta in the Hawaii-based pelagic longline fishery.  Endangered Species Research 2008.  [download]
Howell EA, Wabnitz CCC, Dunne JP, Polovina JJ
2012.  Climate-induced primary productivity change and fishing impacts on the Central North Pacific ecosystem and Hawaii-based pelagic longline fishery.  Climatic Change 119(1): 79-83. doi:10.1007/s10584-012-0597-z.  [download]
Johnston DW, McDonald M, Polovina J, Domokos R, Wiggins S, Hildebrand J
2008.  Temporal patterns in the acoustic signals of beaked whales at Cross Seamount.  Biology Letters 4(2): 208-211.
Karnauskas KB, Cohen AL, Gove JM
2016.  Mitigation of coral reef warming across the Central Pacific by the equatorial undercurrent: a past and future divide.  Scientific Reports 6:21213. doi:10.1038/srep21213.  [download]
Kobayashi DR
2006.  Colonization of the Hawaiian Archipelago via Johnston Atoll: a characterization of oceanographic transport corridors for pelagic larvae using computer simulation.  Coral Reefs 25(3): 407-417.
Kobayashi D, Friedlander A, Grimes C, Nichols R, Zgliczynski B
2011.  Bumphead parrotfish (Bolbometopon muricatum) status review.  U.S. Dept. of Commerce, NOAA Technical Memorandum NOAA-TM-NMFS-PIFSC-26, 101 p. + Appendices.  [download]
Kobayashi DR
1993.  Effects of increasing the minimum size limit or imposing fishing closures on three species of Hawaiian deepwater snappers.  Southwest Fisheries Science Center Administrative Report H-93-01, 18 p.  [download]
Kobayashi DR
1993.  Natural mortality rate estimation and fishery characterization for white ulua (Caranx ignobilis) in the Hawaiian Islands.  Southwest Fisheries Science Center Administrative Report H-93-02, 18 p.  [download]
Kobayashi DR
2008.  Spatial connectivity of Pacific insular species: Insights from modeling and tagging.  Thesis (Ph.D.). Dept. of Environmental Sciences, University of Technology, Sydney. 220 p.  [download]
Kobayashi DR, Cheng IJ, Parker DM, Polovina JJ, Kamezaki N, Balazs GH
2011.  Loggerhead turtle (Caretta caretta) movement off the coast of Taiwan: characterization of a hotspot in the East China Sea and investigation of mesoscale eddies.  ICES Journal of Marine Science. doi:10.1093/icesjms/fsq185.
Kobayashi DR, Farman R, Polovina JJ, Parker DM, Rice MH, Balazs G
2014.  "Going with the flow" or not: evidence of positive rheotaxis in oceanic juvenile loggerhead turtles (Caretta caretta) in the South Pacific Ocean using satellite tags and ocean circulation data.  PLoS ONE 9(8): e103701. doi:10.1371/journal.pone.0103701.  [download]
Kobayashi DR, Kawamoto KE
1995.  Evaluation of shark, dolphin, and monk seal interactions with Northwestern Hawaiian Island bottomfishing activity: a comparison of two time periods and an estimate of economic impacts.  Fisheries Research 23: 11-22.
Kobayashi DR, Moffitt RB
2005.  Documentation of the maximum sustainable yield calculations for the bottomfish fishery in the Hawaiian Archipelago.  Pacific Islands Fisheries Science Center, PIFSC Internal Report, IR-05-019, 4 p.  [download]
Kobayashi DR, Polovina JJ
2005.  Evaluation of time-area closures to reduce incidental sea turtle take in the Hawaii-based longline fishery: generalized additive model (GAM) development and retrospective examination.  U.S. Dept. of Commerce, NOAA Technical Memorandum NOAA-TM-NMFS-PIFSC-4, 39 p.  [download]
Kobayashi DR, Polovina JJ
2006.  Simulated seasonal and interannual variability in larval transport and oceanography in the Northwestern Hawaiian Islands using satellite remotely sensed data and computer modelling.  Atoll Research Bulletin 543: 365-390.  [download]
Kobayashi DR, Polovina JJ, Parker DM, Kamezaki N, Cheng IJ, Uchida I, Dutton PH, Balazs GH
2008.  Pelagic habitat characterization of loggerhead sea turtles, Caretta caretta, in the North Pacific Ocean (1997-2006): Insights from satellite tag tracking and remotely sensed data.  Journal of Experimental Marine Biology and Ecology 356(1-2): 96-114.
Landgraf KC, Kobayashi DR
1993.  Time series of environmental variables, abundance, and catch data (1986-1988) for nehu (Encrasicholina purpurea) at Pearl Harbor, Oahu, Hawaii.  Southwest Fisheries Science Center Administrative Report H-93-19, 34 p. .  [download]
Laurs RM, Polovina JJ
2000.  Satellite remote sensing: an important tool in fisheries oceanography.  In: Harrison PJ and Parson TR (eds.) Fisheries oceanography: An integrative approach to fisheries ecology and management, p. 146-157. Oxford: Blackwell Science, 347 p.
Lehodey P, Conchon A, Senina I, Domokos R, Calmettes B, Jouanno J, Hernandez O, Kloser R
2015.  Optimization of a micronekton model with acoustic data.  ICES Journal of Marine Science. doi:10.1093/icesjms/fsu233.
Lehodey P, Senina I, Calmettes B, Royer F, Gaspar P, Abecassis M, Polovina J, Parker D, Domokos R, Hernandez O, Dessert M, Kloser R, Young J, Lutcavage M, Handegard NO, Hampton J
2010.  Towards operational management of pelagic ecosystems.  ICES CM 2010; A:04.  [download]
Leonard CL, Bidigare RR, Ash NL, Seki MP
1998.  Mesoscale chlorophyll variations in the North Pacific as revealed by shipboard and satellite measurements.  For presentation at the Ocean Optics XIV Meeting, 10-13 November 1998, Kailua-Kona, Hawaii.
Leonard CL, Bidigare RR, Seki MP, Polovina JJ
2001.  Interannual mesoscale physical and biological variability in the North Pacific Central Gyre.  Progress in Oceanography 49: 227-244.
Link JS, Ihde TF, Townsend HM, Osgood KE, Schirripa MJ, Kobayashi DR, Gaichas S, Field JC, Levin PS, Aydin KY, Harvey CJ (eds.)
2010.  Report of the 2nd National Ecosystem Modeling Workshop (NEMoW II)  U.S. Dept. of Commerce, NOAA Technical Memorandum NOAA-TM-NMFS-F/SPO-102, 78 p.  [download]
Littnan CL, Baker JD, Parrish FA, Marshall GJ
2004.  Effects of video camera attachment on the foraging behavior of immature Hawaiian monk seals.  Marine Mammal Science 20(2): 345-352. doi:10.1111/j.1748-7692.2004.tb01164.x.
McCracken ML
2000.  Estimation of sea turtle take and mortality in the Hawaiian longline fisheries.  Southwest Fisheries Science Center Administrative Report H-00-06, 29 p.  [download]
McCracken ML
2001.  Estimation of albatross take in the Hawaiian longline fisheries.  Southwest Fisheries Science Center Administrative Report H-01-03, 26 p.  [download]
Moffitt RB, Kobayashi DR
2000.  Recommended overfishing definitions and control rules for the Western Pacific Regional Fishery Management Council's bottomfish and Seamount Groundfish Fishery Management Plan.  Southwest Fisheries Science Center Administrative Report H-00-03, 8 p.  [download]
Moffitt RB, Kobayashi DR, DiNardo GT
2006.  Status of the Hawaiian Bottomfish Stocks, 2004.  Pacific Islands Fisheries Science Center Administrative Report H-06-01, 45 p.  [download]
Moffitt RB, Parrish FA
1992.  An assessment of the exploitable biomass of Heterocarpus laevigatus in the main Hawaiian Islands. Pt. 2: Observations from a submersible.  Fishery Bulletin 90: 476-482.
Moffitt RB, Parrish FA
1996.  Habitat and life history of juvenile Hawaiian pink snapper, Pristipomoides filamentosus.  Pacific Science 50: 371-381.
Mundy BC, Parrish FA
2004.  New records of the fish genus Grammatonotus (Teleostei: Perciformes: Percoidei: Callanthiidae) from the central Pacific, including a spectacular species in the Northwestern Hawaiian Islands.  Pacific Science 58(3): 403-417.  [download]
Nakano H, Seki MP
2002.  Synopsis of biological data on the blue shark, Prionace glauca Linnaeus.  Bulletin of the Fisheries Research Agency No. 6, 18-55.
Oleson EM, Boggs CH, Forney KA, Hanson MB, Kobayashi DR, Taylor BL, Wade PR, Ylitalo GM
2012.  Reevaluation of the DPS designation for Hawaiian (now main Hawaiian Islands) insular false killer whales.  Pacific Islands Fisheries Science Center, PIFSC Internal Report, IR-12-038, 39 p.  [download]
Parrish FA
1989.  Identification of habitat of juvenile snappers in Hawaii.  Fishery Bulletin 87: 1001-1005.
Parrish FA
1999.  Use of technical diving to survey forage habitat of the endangered Hawaiian monk seal.  To be presented at the Technical Diving Forum, American Association of Underwater Scientists, Monterey, California, November 3, 1999.
Parrish FA
2004.  Foraging landscape of the Hawaiian monk seal.  Thesis (Ph.D.). University of Hawaii, Honolulu, Hawaii. 146 p.  [download]
Parrish FA
2006.  Precious corals and subphotic fish assemblages.  Atoll Research Bulletin 543: 425-438.  [download]
Parrish FA
2007.  Density and habitat of three deep-sea corals in the lower Hawaiian chain.  In: RY George and SD Cairns (eds.). Conservation and adaptive management of seamount and deep-sea coral ecosytems. Rosenstiel School of Marine and Atmospheric Science, University of Miami.  [download]
Parrish FA and Baco AR
2007.  State of deep coral ecosystems in the U.S. Pacific Islands Region: Hawaii and the U.S. Pacific Territories.  In: Lumsden SE, Hourigan TF, Bruckner AW, Dorr G (eds.) 2007. The state of deep coral ecosystems of the United States: 2007, p. 155-194 (Ch.4). NOAA Technical Memorandum CRCP - 3. 365 p.  [download]
Parrish FA, Abernathy K
2006.  Movements of monk seals relative to ecological depth zones in the lower Northwestern Hawaiian Islands.  Atoll Research Bulletin 543: 115-130.  [download]
Parrish FA, Abernathy K, Marshall GJ, Buhleier BM
2002.  Hawaiian monk seals (Monachus schauinslandi) foraging in deep-water coral beds.  Marine Mammal Science 18(1): 244-258. doi:10.1111/j.1748-7692.2002.tb01031.x.
Parrish FA, Boland RC
2004.  Habitat and reef-fish assemblages of banks in the Northwestern Hawaiian Islands.  Marine Biology 144: 1065-1073.
Parrish FA, Craig M, Abernathy K, Marshall G, Buhleier B
1999.  Use of deepwater coral beds by monk seals at French Frigate Shoals, Hawaii.  To be presented at the World Marine Mammal Conference 13th Biennial Conference, Maui, Hawaii, 28 November - 3 December 1999.
Parrish FA, Craig MC, Ragen TJ, Marshall G, Buhleier B, Fuchs K
1997.  Foraging habitat of the adult Hawaiian monk seal at French Frigate Shoals, Hawaii.  World Marine Mammal Conference, Monaco, January 20-24, 1998.
Parrish FA, Craig MP, Ragen TJ, Marshall GJ, Buhleier BM
2000.  Identifying diurnal foraging habitat of endangered Hawaiian monk seals using a seal-mounted video camera.  Marine Mammal Science 16(2):392-412. doi:10.1111/j.1748-7692.2000.tb00932.x.
Parrish FA, DeMartini EE, Ellis DM
1997.  Nursery habitat in relation to production of juvenile pink snapper, Pristipomoides filamentosus, in the Hawaiian Archipelago.  Fishery Bulletin 95: 137-148.
Parrish FA, Goto RS
1997.  Patterns of insular shark dynamics based on fishery bycatch and lifeguard surveillance at Oahu, Hawaii 1983-1992.  Bulletin of Marine Science 61(3):763-777.
Parrish FA, Howell EA, Antonelis GA, Iverson SJ, Littnan CL, Parrish JD, Polovina JJ
2012.  Estimating the carrying capacity of French Frigate Shoals for the endangered Hawaiian monk seal using Ecopath and Ecosim.  Marine Mammal Science 28(3): 522-541. doi:10.1111/j.1748-7692.2011.00502.x .  [download]
Parrish FA, Kazama TK
1992.  Evaluation of ghost fishing in the Hawaiian lobster fishery.  Fishery Bulletin 90: 720-725.
Parrish FA, Littnan CL
2008.  Changing perspectives in Hawaiian monk seal research using animal-borne imaging.  Marine Technology Society Journal 41(4): 30-34. doi:10.4031/002533207787441944.  [download]
Parrish FA, Marshall GJ, Buhleier B, Antonelis GA
2008.  Foraging interaction between monk seals and large predatory fish in the Northwestern Hawaiian Islands.  Endangered Species Research 4(3): 299-308. doi:10.3354/esr00090.  [download]
Parrish FA, Marshall GJ, Littnan CL, Heithaus M, Canja S, Becker B, Braun R, Antonelis GA
2005.  Foraging of juvenile monk seals at French Frigate Shoals, Hawaii.  Marine Mammal Science 21(1): 93-107. doi:10.1111/j.1748-7692.2005.tb01210.x.
Parrish FA, Martinelli-Liedtke TL
1999.  Some preliminary findings on the nutritional status of the Hawaiian spiny lobster (Panulirus marginatus)  Pacific Science 53: 361-366.
Parrish FA, Moffitt RB
1992.  Subsurface fish handling to limit decompression effects on deepwater species.  Marine Fisheries Review 54(3): 29-32.
Parrish FA, Polovina JJ
1994.  Habitat thresholds and bottlenecks in production in the spiny lobster (Panulirus marginatus) in the Northwestern Hawaiian Islands.  Bulletin of Marine Science 54(1): 151-163.
Parrish FA, Pyle RL
2002.  Field comparison of open-circuit scuba to closed-circuit rebreathers for deep mixed-gas diving operations.  Marine Technology Society Journal 36(2): 13-22.
Parrish FA, Roark EB
2009.  Growth validation of gold coral Gerardia sp. in the Hawaiian Archipelago.  Marine Ecology Progress Series 397: 163-172.
Patrick WS, Spencer P, Link J, Cope J, Field J, Kobayashi D, Lawson P, Gedamke T, Cortes E, Ormseth O, Bigelow K, Overholtz W
2010.  Using productivity and susceptibility indices to assess the vulnerability of United States fish stocks to overfishing.  Fishery Bulletin 108(3): 305-322.  [download]
Patrick WS, Spencer P, Ormseth O, Cope J, Field J, Kobayashi D, Gedamke T, Cortes E, Bigelow K, Overholtz W, Link J, Lawson P
2009.  Use of productivity and susceptibility indices to determine stock vulnerability, with example applications to six U.S. fisheries.  U.S. Dept. of Commerce, NOAA Technical Memorandum NOAA-TM-NMFS-F/SPO-101, 90 p.  [download]
Polovina J and Dreflak K (Chairs), Baker J, Bloom S, Brooke S, Chan V, Ellgen S, Golden D, Hospital J, Van Houtan K, Kolinski S, Lumsden B, Maison K, Mansker M, Oliver T, Spalding S, Woodworth-Jefcoats P
2016.  Pacific Islands Regional Action Plan: NOAA Fisheries climate science strategy.  U.S. Dept. of Commerce, NOAA Technical Memorandum NOAA-TM-NMFS-PIFSC-59, 33 p. doi:10.7289/V5/TM-PIFSC-59.  [download]
Polovina J, Uchida I, Balazs G, Howell EA, Parker P, Dutton P
2006.  The Kuroshio Extension Bifurcation Region: A pelagic hotspot for juvenile loggerhead sea turtles.  Deep-Sea Research Part II 53(3-4): 326-339.
Polovina JJ
1991.  Status of lobster stocks in the Northwestern Hawaiian Islands, 1990.  Southwest Fisheries Science Center Administrative Report H-91-04, 16 p. .  [download]
Polovina JJ
2000.  The lobster fishery in the Northwestern Hawaiian Islands.  In: Phillips BF and Kittaka J (eds.). Spiny lobsters: Fisheries and culture, p. 98-104. Oxford: Fish. News Books, 2nd ed., 679 p.
Polovina JJ
2005.  Climate variation, regime shifts, and implications for sustainable fisheries.  Bulletin of Marine Science 76(2): 233-244.
Polovina JJ, Abecassis M, Howell EA, Woodworth P
2009.  Increases in the relative abundance of mid-trophic level fishes concurrent with declines in apex predators in the subtropical North Pacific, 1996-2006.  Fishery Bulletin 107(4): 523-531.  [download]
Polovina JJ, Balazs GH, Howell EA, Parker DM, Seki MP, Dutton PH
2004.  Forage and migration habitat of loggerhead (Caretta caretta) and olive ridley (Lepidochelys olivacea) sea turtles in the central North Pacific Ocean.  Fisheries Oceanography 13(1): 36-51.
Polovina JJ, Chai F, Howell EA, Kobayashi DR, Shi L, Chao Y
2008.  Ecosystem dynamics at a productivity gradient: A study of the lower trophic dynamics around the northern atolls in the Hawaiian Archipelago.  Progress in Oceanography 77(2-3): 217-224.
Polovina JJ, Dunne JP, Woodworth PA, Howell EA
2011.  Projected expansion of the subtropical biome and contraction of the termperate and equatorial upwelling biomes in the North Pacific under global warming.  ICES Journal of Marine Science doi:10.1093/icesjms/fsq198.
Polovina JJ, Hawn D, Abecassis M
2008.  Vertical movement and habitat of opah (Lampris guttatus) in the central North Pacific recorded with pop-up archival tags.  Marine Biology 153(3): 257-267.
Polovina JJ, Howell E, Kobayashi DR, Seki MP
2001.  The Transition Zone Chlorophyll Font, a dynamic global feature defining migration and forage habitat for marine resources.  Progress in Oceanography 49: 469-483.
Polovina JJ, Howell EA
2005.  Ecosystem indicators derived from satellite remotely sensed oceanographic data for the North Pacific.  ICES Journal of Marine Science 62(3): 319-327.
Polovina JJ, Howell EA, Abecassis M
2008.  Ocean's least productive waters are expanding.  Geophysical Research Letters 35(3): n.p.
Polovina JJ, Howell EA, Kobayashi DR, Seki MP
2015.  The Transition Zone Chlorophyll Front updated: advances from a decade of research.  Progress in Oceanography. doi:10.1016/j.pocean.2015.01.006 (In Press)  [download]
Polovina JJ, Howell EA, Parker DM, Balazs GH
2003.  Dive-depth distribution of loggerhead (Caretta carretta) and olive ridley (Lepidochelys olivacea) sea turtles in the central North Pacific: Might deep longline sets catch fewer turtles?  Fishery Bulletin 101(1): 189-193.  [download]
Polovina JJ, Kobayashi DR, Ellis DM, Seki MP, Balazs GH
2000.  Turtles on the edge: Movement of loggerhead turtles (Caretta caretta) along oceanic fronts in the central North Pacific, 1997-1998.  Fisheries Oceanography 9(1): 71-82.
Polovina JJ, Seki MP, Howell E
2000.  Sensors detect biological change in mid-latitude North Pacific.  Eos, Transactions, American Geophysical Union 81(44): 519.
Polovina JJ, Woodworth PA
2012.  Declines in phytoplankton cell size in the subtropical oceans estimated from satellite remotely-sensed temperature and chlorophyll, 1998-2007.  Deep-Sea Research II 77-80: 82-88. doi:10.1016/j.dsr2.2012.04.006.  [download]
Polovina JJ, Woodworth-Jefcoats PA
2013.  Fishery-induced changes in the subtropical Pacific pelagic ecosystem size structure: observations and theory.  PLoS ONE 8(4): e62341. doi:10.1371/journal.pone.0062341.  [download]
Rivera MAJ, Andrews KR, Kobayashi DR, Wren JLK, Kelley C, Roderick GK, Toonen RJ
2011.  Genetic analyses and simulations of larval dispersal reveal distinct populations and directional connectivity across the range of the Hawaiian grouper (Epinephelus quernus)  Journal of Marine Biology Volume 2011, Article ID 765353, 11 p. doi:10.1155/2011/765353.  [download]
Runcie RM, Dewar H, Hawn DR, Frank LR, Dickson KA
2009.  Evidence for cranial endothermy in the opah (Lampris guttatus)  Journal of Experimental Biology 212(4): 461-470.
Seeb LW, Seeb JE, Polovina JJ
1990.  Genetic variation in highly exploited spiny lobster, Panulirus marginatus, populations from the Hawaiian Archipelago.  Fishery Bulletin 83: 713-718.  [download]
Seki MP
2001.  Distribution patterns of pelagic cephalopods through the Subarctic and Subtropical Frontal Zones in the central North Pacific.  Thesis (M.S.c.). Dept. of Oceanography, University of Hawaii, Honolulu, Hawaii. 102 p.
Seki MP
2003.  Physical characterization and biological responses at large mesoscale oceanographic phenomena in the Subtropical North Pacific.  Thesis (Ph.D.). Graduate School of Fisheries and Faculty of Fisheries, Hokkaido University.
Seki MP, Lumpkin R, Flament P
2002.  Hawaii cyclonic eddies and blue marlin catches: The case study of the 1995 Hawaiian International Billfish Tournament.  Journal of Oceanography 58: 739-745.
Seki MP, Polovina JJ
2001.  Food webs: ocean gyre ecosystems.  In: JH Steele, KK Turekian and SA Thorpe (eds.) Encyclopedia of Ocean Sciences, vol. 4, pp. 1959-1965.
Seki MP, Polovina JJ, Brainard RE, Bidigare RR, Leonard CL, Foley DG
2001.  Biological enhancement at cyclonic eddies tracked with GOES thermal imagery in Hawaiian waters.  Geophysical Research Letters 28(8): 1583-1586.
Seki MP, Polovina JJ, Kobayashi DR, Bidigare RR, Mitchum GT
2002.  An oceanographic characterization of swordfish (Xiphias gladius) longline fishing grounds in the springtime subtropical North Pacific.  Fisheries Oceanography 11(5): 251-266.
Somerton DA, Kobayashi DR
1990.  Some effects of a seasonal fishing closure on opakapaka, pristipomoides filamentosus.  Southwest Fisheries Science Center Administrative Report H-90-16, 9 p. .  [download]
Suntsov A, Domokos R
2013.  Vertically migrating micronekton and macrozooplankton communities around Guam and the Northern Mariana Islands.  Deep-Sea Research I 71: 113-129. doi:10.1016/j.dsr.2012.10.009.
Thums M, Meekan M, Stevens J, Wilson S, Polovina J
2012.  Evidence for behavioural thermoregulation by the world's largest fish.  Journal of the Royal Society Interface 10(78) 20120477. doi:10.1098/rsif.2012.0477.
Vaillancourt RD, Marra J, Seki MP, Parsons ML, Bidigare RR
2003.  Impact of a cyclonic eddy on phytoplankton community structure and photosynthetic competency in the subtropical North Pacific Ocean.  Deep-Sea Research Part I 50: 829-847.
Watters GM, Olson RJ, Francis RC, Fiedler PC, Polovina JJ, Reilly SB, Aydin KY, Boggs CH, Essington TE, Walters CJ, Kitchell JF
2003.  Physical forcing and the dynamics of the pelagic ecosystem in the eastern tropical Pacific: simulations with ENSO-scale and global-warming climate drivers.  Canadian Journal of Fisheries and Aquatic Sciences 60: 1161-1175. DOIL 10.1139/F03-100.
Wilson SG, Polovina JJ, Stewart BS, Meekan MG
2006.  Movements of whale sharks (Rhincodon typus) tagged at Ningaloo Reef, Western Australia.  Marine Biology 148(5): 1157-1166.
Wilson SG, Stewart BS, Polovina JJ, Meekan MG, Stevens JD, Galuardi B
2007.  Accuracy and precision of archival tag data: a multiple-tagging study conducted on a whale shark (Rhincodon typus) in the Indian Ocean.  Fisheries Oceanography 16(6): 547-554.
Woodworth PA, Schorr GS, Baird RW, Webster DL, McSweeney DJ, Hanson MB, Andrews RD, Polovina JJ
2012.  Eddies as offshore foraging grounds for melon-headed whales.  Marine Mammal Science 28(3): 638-647. doi:10.1111/j.1748-7692.2011.00509.x.  [download]
Woodworth-Jefcoats PA, Polovina JJ, Drazen JC
2016.  Climate change is projected to reduce carrying capacity and redistribute species richness in North Pacific pelagic marine ecosystems.  Global Change Biology. doi:10.1111/gcb.13471.
Woodworth-Jefcoats PA, Polovina JJ, Dunne JP, Blanchard JL
2012.  Ecosystem size structure response to 21st century climate projection: large fish abundance decreases in the central North Pacific and increases in the California Current.  Global Change Biology 19(3): 724-733. doi:10.1111/gcb.12076.
Woodworth-Jefcoats PA, Polovina JJ, Howell EA, Blanchard JL
2015.  Two takes on the ecosystem impacts of climate change and fishing: Comparing a size-based and a species-based ecosystem model in the central North Pacific.  Progress in Oceanography. doi:10.1016/j.pocean.2015.04.004.
Wren JLK, Kobayashi DR
2016.  Exploration of the "larval pool": development and ground-truthing of a larval transport model off leeward Hawai`i.  PeerJ 4:e1636. doi:10.7717/peerj.1636.  [download]